Package index • MOSuite

All functions

calc_cpm(): Calculate counts-per-million (CPM) on raw counts in a multiOmicDataSet

create_multiOmicDataSet_from_dataframes(): Construct a multiOmicDataSet object from data frames

create_multiOmicDataSet_from_files(): Construct a multiOmicDataSet object from tsv files.

filter_counts(): Filter low counts

gene_counts: RSEM expected gene counts

meta_tbl_to_dat(): Convert sample metadata from a tibble to a dataframe with sample IDs as row names

multiOmicDataSet(): multiOmicDataSet class

nidap_clean_raw_counts: Clean raw counts for the NIDAP test dataset. Pairs with nidap_sample_metadata.

nidap_filtered_counts: Filtered counts for the NIDAP test dataset. The result of running filter_counts() on nidap_clean_raw_counts.

nidap_sample_metadata: Sample metadata for the NIDAP test dataset

run_deseq2(): Run DESeq2 on a multiOmicDataSet