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multiOmicDataSet class

Source: R/0_mo-class.R
multiOmicDataSet.Rd

Re-exported from MOObject::multiOmicDataSet – view the MOObject docs for details.

Usage

multiOmicDataSet(sample_metadata, anno_dat, counts_lst, analyses_lst = list())

Arguments

sample_metadata

sample metadata as a data frame or tibble. The first column is assumed to contain the sample IDs which must correspond to column names in the raw counts.

anno_dat

data frame of feature annotations, such as gene symbols or any other information about the features in counts_lst.

counts_lst

named list of data frames containing counts, e.g. expected feature counts from RSEM. Each data frame is expected to contain a feature_id column as the first column, and all remaining columns are sample IDs in the sample_meta.

analyses_lst

named list of analysis results, e.g. DESeq results object

See also

MOObject::multiOmicDataSet

Other moo IO: create_multiOmicDataSet_from_dataframes(), create_multiOmicDataSet_from_files(), read_multiOmicDataSet(), read_multiOmicDataSet_properties(), write_multiOmicDataSet(), write_multiOmicDataSet_properties()