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Construct a multiOmicDataSet object from data frames

Source: R/0_mo-class.R
create_multiOmicDataSet_from_dataframes.Rd

Wraps MOObject::create_multiOmicDataSet_from_dataframes() to add a "colors" analysis if it is not already present.

Usage

create_multiOmicDataSet_from_dataframes(
  sample_metadata,
  counts_dat,
  sample_id_colname = NULL,
  feature_id_colname = NULL,
  count_type = "raw"
)

Arguments

sample_metadata

sample metadata as a data frame or tibble. The first column is assumed to contain the sample IDs which must correspond to column names in the raw counts.

counts_dat

data frame of feature counts (e.g. expected feature counts from RSEM).

sample_id_colname

name of the column in sample_metadata that contains the sample IDs. (Default: NULL - first column in the sample metadata will be used.)

feature_id_colname

name of the column in counts_dat that contains feature/gene IDs. (Default: NULL - first column in the count data will be used.)

count_type

type to assign the values of counts_dat to in the counts slot

Value

A MOObject::multiOmicDataSet object.

See also

MOObject::create_multiOmicDataSet_from_dataframes()

Other moo IO: create_multiOmicDataSet_from_files(), multiOmicDataSet(), read_multiOmicDataSet(), read_multiOmicDataSet_properties(), write_multiOmicDataSet(), write_multiOmicDataSet_properties()