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Plot histogram for multiOmicDataSet

Source: R/plot_histogram.R
plot_histogram_moo.Rd

Plot histogram for multiOmicDataSet

Arguments

moo_counts

counts dataframe or multiOmicDataSet containing count_type & sub_count_type in the counts slot

count_type

Required if moo_counts is a multiOmicDataSet: the type of counts to use – must be a name in the counts slot (moo@counts).

sub_count_type

Used if moo_counts is a multiOmicDataSet AND if count_type is a list, specify the sub count type within the list

...

arguments forwarded to method: plot_histogram_dat

See also

plot_histogram generic

Other plotters for multiOmicDataSets: plot_corr_heatmap_moo, plot_expr_heatmap_moo, plot_pca_moo, plot_read_depth_moo

Examples

# plot histogram for a counts slot in a multiOmicDataset Object
moo <- multiOmicDataSet(
  sample_metadata = nidap_sample_metadata,
  anno_dat = data.frame(),
  counts_lst = list("raw" = nidap_raw_counts)
)
p <- plot_histogram(moo, count_type = "raw")

# customize the plot
plot_histogram(moo,
  count_type = "raw",
  group_colname = "Group", color_by_group = TRUE
)