Set default colors on a multiOmicDataSet — set_default_colors • MOSuite

Populates moo@analyses$colors using get_colors_lst() with the default MOSuite palette.

Usage

set_default_colors(moo, palette = mosuite_palette)

Arguments

moo: multiOmicDataSet object.
palette: Character vector of colors to assign. Defaults to mosuite_palette.

Value

moo with constructor-style default colors set at moo@analyses$colors.

See also

Other moo methods: batch_correct_counts(), calc_cpm(), clean_raw_counts(), diff_counts(), extract_counts(), filter_counts(), filter_diff(), normalize_counts(), plot_corr_heatmap(), plot_expr_heatmap(), plot_histogram(), plot_pca(), plot_pca_2d(), plot_pca_3d(), plot_read_depth(), plot_venn_diagram(), plot_volcano_enhanced(), plot_volcano_summary(), run_deseq2(), set_color_pal()

Examples

moo <- multiOmicDataSet(
  sample_metadata = as.data.frame(nidap_sample_metadata),
  anno_dat = data.frame(),
  counts_lst = list("raw" = as.data.frame(nidap_raw_counts))
)
moo <- set_default_colors(moo)
names(moo@analyses$colors)
#> [1] "Sample"    "Group"     "Replicate" "Batch"     "Label"