Plot histogram for multiOmicDataSet

Plot histogram for multiOmicDataSet

Arguments

count_type

Required if moo_counts is a multiOmicDataSet: the type of counts to use – must be a name in the counts slot (moo@counts).

sub_count_type

Used if moo_counts is a multiOmicDataSet AND if count_type is a list, specify the sub count type within the list

See also

plot_histogram() generic

Other plotters for multiOmicDataSets: plot_corr_heatmap,MOSuite::multiOmicDataSet-method, plot_pca,MOSuite::multiOmicDataSet-method, plot_read_depth,MOSuite::multiOmicDataSet-method

Examples

# plot histogram for a counts slot in a multiOmicDataset Object
moo <- multiOmicDataSet(
  sample_metadata = nidap_sample_metadata,
  anno_dat = data.frame(),
  counts_lst = list("raw" = nidap_raw_counts)
)
p <- plot_histogram(moo, count_type = "raw")

# customize the plot
plot_histogram(moo,
  count_type = "raw",
  group_colname = "Group", color_by_group = TRUE
)