pipeline.nextflow
pipeline.nextflow
Run Nextflow workflows in local and HPC environments.
- run(nextfile_path=None, nextflow_args=None, mode=“local”, pipeline_name=None, debug=False, hpc_options={}) Run a Nextflow workflow.
Functions
| Name | Description |
|---|---|
| run | Run a Nextflow workflow |
run
pipeline.nextflow.run(
nextfile_path,
nextflow_args=[],
mode='local',
pipeline_name=None,
debug=False,
)Run a Nextflow workflow
Parameters
| Name | Type | Description | Default |
|---|---|---|---|
| nextfile_path | str |
Path to the Nextflow file. | required |
| nextflow_args | list |
Additional Nextflow arguments. Defaults to an empty list. | [] |
| mode | str |
Execution mode. Defaults to “local”. | 'local' |
Raises
| Name | Type | Description |
|---|---|---|
ValueError |
If mode is ‘slurm’ but no HPC environment was detected. |