External scripts
Additional standalone scripts for various common tasks are added to the path when this package is installed. They are less robust than the CLI Utilities included in the package and do not have any unit tests.
add_gene_name_to_count_matrix.Raggregate_data_tables.Rargparse.bashcancel_snakemake_jobs.shcreate_hpc_link.shextract_value_from_json.pyextract_value_from_yaml.pyfilter_bam_by_readids.pyfilter_fastq_by_readids_highmem.pyfilter_fastq_by_readids_highmem_pe.pygather_cluster_stats.shgather_cluster_stats_biowulf.shget_buyin_partition_list.bashget_slurm_file_with_error.shgithub_milestones.shgsea_preranked.shkaryoploter.Rmake_labels_for_pipeliner.shrawcounts2normalizedcounts_DESeq2.Rrawcounts2normalizedcounts_limmavoom.Rrun_jobby_on_nextflow_logrun_jobby_on_nextflow_log_full_formatrun_jobby_on_snakemake_logrun_jobby_on_snakemake_log_full_formatspookerwhich_vpn.sh