Plot read depth for data.frame

Plot read depth for data.frame

Arguments

sample_metadata

sample metadata dataframe, required when group_colname is supplied.

sample_id_colname

column in sample metadata containing sample IDs.

group_colname

sample metadata column used to color bars. Leave blank to use the current single-color bar fill.

color_values

colors used when group_colname is supplied. Named vectors are matched to group values; unnamed vectors follow group order and are extended with MOSuite colors when too few colors are supplied. Defaults to NULL; when NULL, mosuite_palette is used.

...

additional arguments (ignored; accepted for compatibility with the moo dispatch)

Value

ggplot barplot

See also

plot_read_depth() generic

Other plotters for counts dataframes: plot_corr_heatmap,data.frame-method, plot_histogram,data.frame-method, plot_pca,data.frame-method

Examples

# dataframe
plot_read_depth(nidap_clean_raw_counts)