Package index • reneeTools

All functions

counts_dat_to_matrix(): Convert a data frame of gene counts to a matrix

create_reneeDataSet_from_dataframes(): Construct a reneeDataSet object from data frames

create_reneeDataSet_from_files(): Construct a reneeDataSet object from tsv files.

filter_low_counts(): filter_low_counts

gene_counts: RSEM expected gene counts

meta_tbl_to_dat(): Convert sample metadata from a tibble to a dataframe with sample IDs as row names

reneeDataSet(): reneeDataSet class

run_deseq2(): Run DESeq2 on a reneeDataSet