| Data Type | Pipeline Repo | Workflow Manager | Container Available | Contacting Author |
|---|---|---|---|---|
| RNASeq | RNA-Seek | Snakemake | Yes | |
| ExomeSeq | Exome-Seek | Snakemake | Yes | |
| ChipSeq | Chip-Seek | Snakemake | No | |
| scRNASeq | ScRNA-Seek | Nextflow | No | |
| ATACSeq | ASAP | Snakemake | No | |
| CUT&Run | CUT&Run | Snakemake | No | |
| circularRNA | CHARLIE | Snakemake | No |
