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Welcome to Pipeliner

An open-source, reproducible, and scalable solution for analyzing NGS data.

Pipeliner provides access to the same best-practices pipelines developed and benchmarked by bioinformatics analysts at CCBR and NCBR. This repository is the main source of documentation for users and developers working with or contributing to Pipeliner.

Our goal is to provide a mechanism or framework for researchers to employ robust, scalable, and reproducible scientific analysis. Over the years, Pipeliner has enabled users across the NIH to meet their research goals-- resulting in dozens of publications and over 16 million hours of compute!

Questions or need help?

Please check out our FAQ or contact page for different ways of getting in touch with the team.

Last update: 2022-11-04