consensus_peaks

Find consensus peaks from peak files, and optionally perform normalization. This is an alternative to the custom/consensuspeaks module.

nf-core subworkflows \
  --git-remote https://github.com/CCBR/nf-modules \
  install consensus/peaks

https://github.com/CCBR/nf-modules/…/subworkflows/CCBR/consensus_peaks/

Input

name	type	description	pattern
ch_peaks	file	The input channel containing the peak files.

Structure: [ val(meta), path(peak) ]. Meta must contain a group variable by which the peaks will be grouped for consensus calling. |*.{bed/narrowPeak/broadPeak} | |normalize |boolean |Whether to normalize p-values and q-values for consensus peaks. |NA |

Output

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
peaks	file	A single consensus peak file for each meta.group	*.{broadPeak,narrowPeak,bed}
versions	file	File containing software versions
Structure: [ path(versions.yml) ]	versions.yml