sort_bed

sort a bed file by chromosome then by start position

nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install sort/bed

https://github.com/CCBR/nf-modules/…/modules/CCBR/sort/bed/

Input

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
bed	file	BED file, or any tab-delimited text file with at least two columns	*.bed

Output

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
bed	file	input file sorted by first and second columns	*.bed
versions	file	File containing software versions	versions.yml

Tools

GNU_coreutils

Home       GPL-3.0

The GNU Core Utilities are the basic file, shell and text manipulation utilities of the GNU operating system. These are the core utilities which are expected to exist on every operating system.