custom_normalizepeaks

normalize p-values and q-values of consensus peaks with the method from Corces et al. (https://doi.org/10.1126/science.aav1898)

nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install custom/normalizepeaks

https://github.com/CCBR/nf-modules/…/modules/CCBR/custom/normalizepeaks/

Input

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
count	file	consensus peak file from custom/combinepeakcounts	*.bed
peaks	file	merged and sorted peak file	*.bed

Output

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
bed	file	consensus peak file with normalized p-values and q-values	NA
versions	file	File containing software versions	versions.yml

Tools

R

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