custom_combinepeakcounts

combine counts into consensus peaks

chipseq
peaks
consensus
nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install custom/combinepeakcounts

https://github.com/CCBR/nf-modules/…/modules/CCBR/custom/combinepeakcounts/

Input

name type description pattern
meta map Groovy Map containing sample information
e.g. [ id:'test', single_end:false ] NA
counts file peak file from bedops/bedmap *.bed

Output

name type description pattern
meta map Groovy Map containing sample information
e.g. [ id:'test', single_end:false ] NA
bed file consensus peak file NA
versions file File containing software versions versions.yml

Tools

R

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