custom_bed2saf

The module converts a BED file to SAF (simplified annotation format)

bed
saf
annotation
nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install custom/bed2saf

https://github.com/CCBR/nf-modules/…/modules/CCBR/custom/bed2saf/

Input

group name type description pattern
NA meta map Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ] NA
NA bed file BED file *.bed

Output

group name type description pattern
saf meta map Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ] NA
saf *.saf file SAF file *.saf
versions_python ${task.process} string The name of the process NA
versions_python python string The name of the tool NA
versions_python python –version 2>&1 | sed “s/^Python //” eval The expression to obtain the version of the tool NA

Tools

Python

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