| group | name | type | description |
|---|---|---|---|
| NA | meta | map | Groovy Map containing sample information |
| e.g. [ id:‘test’, single_end:false ] | |||
| NA | sicer_peaks | file | SICER peak file |
convert_sicer
Convert SICER output to BED and broadPeak format
sicer
peaks
chipseq
bed
broadPeak
nf-core modules \
--git-remote https://github.com/CCBR/nf-modules \
install convert/sicerhttps://github.com/CCBR/nf-modules/…/modules/CCBR/custom/convertsicer/
Input
Output
| group | name | type | description | pattern |
|---|---|---|---|---|
| NA | bed | file | BED file | *.bed |
| NA | peak | file | broadPeak file | *.broadPeak |
| NA | versions | file | File containing software versions | versions.yml |
Tools
Python
Home Python License 2.0
The Python Programming Language