cat_fastq

Concatenates fastq files. Adapted from the nf-core cat module https://github.com/nf-core/modules/tree/9326d73af3fbe2ee90d9ce0a737461a727c5118e/modules/nf-core/cat

nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install cat/fastq

https://github.com/CCBR/nf-modules/…/modules/CCBR/cat/fastq/

Input

name	type	description
meta	map	Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]
reads	file	List of input FastQ files to be concatenated.

Output

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:‘test’, single_end:false ]	NA
reads	file	Merged fastq file	*.{merged.fastq.gz}
versions	file	File containing software versions	versions.yml

Tools

cat

  Docs     GPL-3.0-or-later

The cat utility reads files sequentially, writing them to the standard output.