bwa_index

Create BWA index for reference genome. Adapted from the nf-core bwa index module.

nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install bwa/index

https://github.com/CCBR/nf-modules/…/modules/CCBR/bwa/index/

Input

group	name	type	description
NA	meta	map	Groovy Map containing reference information.
e.g. [ id:‘test’, single_end:false ]
NA	fasta	file	Input genome fasta file

Output

group	name	type	description	pattern
NA	meta	map	Groovy Map containing reference information.
e.g. [ id:‘test’, single_end:false ]	NA
NA	index	file	BWA genome index files	*.{amb,ann,bwt,pac,sa}
NA	versions	file	File containing software versions	versions.yml

Tools

bwa

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BWA is a software package for mapping DNA sequences against a large reference genome, such as the human genome.