bedops_bedmap

The bedmap program is used to retrieve and process signal or other features over regions of interest in BED files

nf-core modules \
  --git-remote https://github.com/CCBR/nf-modules \
  install bedops/bedmap

https://github.com/CCBR/nf-modules/…/modules/CCBR/bedops/bedmap/

Input

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
refbed	file	BED file	*.bed
mapbed	file	BED file	*.bed

Output

name	type	description	pattern
meta	map	Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]	NA
mapped_bed	file	BED file	*.bed
versions	file	File containing software versions	versions.yml

Tools

bedops

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fast, highly scalable and easily-parallelizable genome analysis toolkit