Skip to contents

split_featurePlot: Splits FeaturePlot by groups

split_featurePlot.Rd

Adapts the FeaturePlot function from Seurat to split by groups and arrange by user specification

Usage

split_featurePlot(
  so,
  features,
  split_ident,
  label = FALSE,
  ncol = NA,
  nrow = NA,
  min.cutoff = NA,
  max.cutoff = NA,
  plot_image = FALSE,
  return_list = FALSE,
  slot = "scale.data",
  order = FALSE,
  reduction = NULL
)

Arguments

so

A Seurat object

features

A list of features (e.g. genes) to plot on a projection

split_ident

A metadata identity for splitting the image

label

Boolean for whether to label the plot with the current Idents value of the Seurat object

ncol

Integer value for number of columns in plot

nrow

Integer value for number of rows in plot

min.cutoff

Vector of minimum cutoff values for each feature, may specify quantile in the form of 'q##' where '##' is the quantile (eg, 1, 10)

max.cutoff

Vector of maximum cutoff values for each feature, may specify quantile in the form of 'q##' where '##' is the quantile (eg, 1, 10)

plot_image

Boolean for whether to export plots to current visualization window

return_list

Boolean for whether to export list of plots

slot

Data slot from which to extract values

order

Boolean for whether to show highest feature values at the front of the image

reduction

Dimensionality reduction to use

Value

A list of ggplot2 plots