Wrapper script for the SingleR function
Usage
run_singleR(so, ref_file, label)
Arguments
- so
A Seurat single cell object
- ref_file
A reference file in a SingleCellExperiment format, such as those obtained from SingleR/CellDex
package
- label
The label identity to be used. Must be a column header in the metadata of ref_file
Value
A vector of pruned cell type labels