make_bubble_plot: Flexible dotplot — make_bubble_plot • SCOT

Creates a bubble plot that shows average expression percent expression for genes in single cell categories

Usage

make_bubble_plot(
  so,
  features,
  palette = "RdBu",
  assay = "SCT",
  scale = FALSE,
  ident = "seurat_clusters"
)

Arguments

so: A Seurat single cell RNA object
features: A character vector of genes to plot
palette: A color palette from ggplot2
assay: The counts assay to use for determining expression
scale: Boolean to scale average expression across identities
ident: The categorical identity to classify groups of cells

Value

A ggplot2 figure