add_VDJ_metadata: Appends V(D)J alignments from CellRanger to an existing Seurat object

Wrapper for djvdj to assign V(D)J alignments to cells in a Seurat object. Can be used for TCRa/TCRb, TCRg/TCRd, and BCR

Usage

add_VDJ_metadata(so, vdj_file)

Arguments

so

A Seurat single cell RNA object

vdj_file

A path to a V(D)J annotation directory from CellRanger

Value

A Seurat object with V(D)J metadata