Write multiOmicDataSet properties to individual files.

The sample_meta and annotation properties are written to CSV files, the counts property is written to a subdirectory of CSV files, and the analyses property is written to a subdirectory of CSV or RDS files depending on the type of each analysis result.

Usage

write_multiOmicDataSet_properties(moo, output_dir = "moo")

## S7 method for class <MOObject::multiOmicDataSet>
write_multiOmicDataSet_properties(moo, output_dir = "moo")

Arguments

moo

multiOmicDataSet object to write properties from

output_dir

Directory where the properties will be saved (default: "moo")

Value

Invisibly returns output_dir.

See also

Other moo: create_multiOmicDataSet_from_dataframes(), create_multiOmicDataSet_from_files(), extract_counts(), multiOmicDataSet(), read_multiOmicDataSet(), read_multiOmicDataSet_properties(), write_multiOmicDataSet()

Examples

sample_metadata <- data.frame(sample_id = c("s1", "s2"), group = c("A", "B"))
counts_dat <- data.frame(
  feature_id = c("gene1", "gene2"),
  s1 = c(10, 20),
  s2 = c(15, 25)
)
moo <- create_multiOmicDataSet_from_dataframes(sample_metadata, counts_dat)
output_dir <- tempfile()
write_multiOmicDataSet_properties(moo, output_dir)