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Example Data

Example Data

Build

Expected output

/scratch/$USER/METRO/transcripts.fa

Prepare

Three files are available for input testing of this subcommand, with the --vafFilter 0.2 flag:

 - /METRO/data/test_prepare_input1.maf
 - /METRO/data/test_prepare_input2.maf
 - /METRO/data/test_prepare_input3.maf

Expected output file:

/METRO/data/test_VAF20_Variant.csv

Find

One file is available for input testing of this subcommand:

- /METRO/data/test_VAF20_Variant.csv 
Expected output file:
/METRO/data/test_VAF20_Variant.metro.tsv

Predict

One file is available for input testing of this subcommand:

- /METRO/data/test_VAF20_Variant.metro.tsv


Last update: 2024-02-15